These are links to sites that we have heard about or found.

Cafe' Eden - Maling Rd, Cantebury
A favourite. Lots and lots of GF meals (and an easy to use gluten free menu) and the prices are reasonable. An affiliate of the Coeliac Society of Victoria.
http://www.cafeeden.com.au/

Lord of the Fries - Melb. CBD (Cnr Elizabeth & Flinders; Flinders St Station)
Their website doesn't mention it but I have it on good authority they do gluten free burgers!
http://www.lordofthefries.com.au/

Silly Yaks Bakery Cafe' - High St, Northcote
Silly Yaks Cafe provides a completely gluten free environment, it serves delicious snacks and all day breakfast. Frozen goods (Chicken Kiev, Chicken Schnitzel, Gnocci, Pasta, Pizza bases, garlic bread, party pies, sausage rolls) are available also.
http://www.sillyyak.com.au/index.htm

Black Ruby - Rathdowne St, Carlton
Gluten free breakfast, lunch and tea. Great food but the service can be a little slow. Small place so make sure you book!
Ph: 9348 2777

Souvlaki Hut - Reservoir, Templestowe Lower, Hillside, Newport, Taylors Lakes
Bringing the classic Souvlaki and the great tasting food of the Mediterranean into everyone's dinner table at an affordable price! Gluten free listings behind the counter (make sure you ask) detail what Coeliacs can and can't eat and you can even eat the fries (without the salt!)
http://www.souvlakihut.com.au/home.html

Nandos - everywhere!
They have lots of food Coeliacs can enjoy safely. Food guides are in every restaurant, detailing what can and can't be enjoyed. Chicken, chips (no salt) and salad are favourites (as is the peri peri sauce)!
http://www.nandos.com.au

S Komatsu - 62 Wellington Parade, East Melbourne
How is this for fabulous?? The entire menu is Gluten-Free, Lactose-Free, Excess Fructose-Free and Preservative-Free so there's no worries about cross contamination or any nasty surprises. Menu is reasonably priced and lots of variety - I love the hamburger!
http://www.nexgeneats.com/s.komatsu/index.html